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» Comparative genome assembly
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ICDE
2004
IEEE
105views Database» more  ICDE 2004»
16 years 5 months ago
SPINE: Putting Backbone into String Indexing
The indexing technique commonly used for long strings, such as genomes, is the suffix tree, which is based on a vertical (intra-path) compaction of the underlying trie structure. ...
Naresh Neelapala, Romil Mittal, Jayant R. Haritsa
SBACPAD
2008
IEEE
126views Hardware» more  SBACPAD 2008»
15 years 10 months ago
A Software Transactional Memory System for an Asymmetric Processor Architecture
Due to the advent of multi-core processors and the consequent need for better concurrent programming abstractions, new synchronization paradigms have emerged. A promising one, kno...
Felipe Goldstein, Alexandro Baldassin, Paulo Cento...
141
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BIBE
2007
IEEE
133views Bioinformatics» more  BIBE 2007»
15 years 10 months ago
Denoising of Array-Based DNA Copy Number Data Using The Dual-tree Complex Wavelet Transform
—Array-based comparative genomic hybridization (array CGH) is a highly efficient technique, allowing the simultaneous measurement of genomic DNA copy number at hundreds or thous...
Nha Nguyen, Heng Huang, Soontorn Oraintara, Yuhang...
140
Voted
DILS
2004
Springer
15 years 9 months ago
Heterogeneous Data Integration with the Consensus Clustering Formalism
Meaningfully integrating massive multi-experimental genomic data sets is becoming critical for the understanding of gene function. We have recently proposed methodologies for integ...
Vladimir Filkov, Steven Skiena
CSB
2003
IEEE
15 years 9 months ago
A New Approach for Gene Annotation Using Unambiguous Sequence Joining
The problem addressed by this paper is accurate and automatic gene annotation following precise identification/annotation of exon and intron boundaries of biologically verified ...
Alexandre Tchourbanov, Daniel Quest, Hesham H. Ali...