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129
Voted
BMCBI
2010
15 years 3 months ago
2010
Background: High throughput sequencing (HTS) platforms produce gigabases of short read (<100 bp) data per run. While these short reads are adequate for resequencing application...
137
Voted
CSB
2005
IEEE
15 years 9 months ago
2005
IEEE
The identification of cis-regulatory elements and modules is an important step in understanding the regulation of genes. We have developed a pipeline capable of running multiple m...
110
Voted
BMCBI
2005
15 years 3 months ago
2005
Background: Despite the continuous production of genome sequence for a number of organisms, reliable, comprehensive, and cost effective gene prediction remains problematic. This i...
145
Voted
IPPS
2005
IEEE
15 years 9 months ago
2005
IEEE
Many applications in Comparative Genomics lend themselves to implementations that take advantage of common high-performance features in modern microprocessors. However, the common...
130
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RECOMB
2005
Springer
16 years 4 months ago
2005
Springer
We present data-analytic and statistical tools for studying rates of rearrangement of whole genomes and to assess the stability of these methods with changes in the level of resol...