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PKDD
2007
Springer
87views Data Mining» more  PKDD 2007»
15 years 10 months ago
Visual Exploration of Genomic Data
Abstract. In this study, we present methods for comparative visualization of DNA sequences in two dimensions. First, we illustrate a transformation of gene sequences into numerical...
Michail Vlachos, Bahar Taneri, Eamonn J. Keogh, Ph...
127
Voted
BMCBI
2005
109views more  BMCBI 2005»
15 years 3 months ago
Genome comparison without alignment using shortest unique substrings
Background: Sequence comparison by alignment is a fundamental tool of molecular biology. In this paper we show how a number of sequence comparison tasks, including the detection o...
Bernhard Haubold, Nora Pierstorff, Friedrich M&oum...
BMCBI
2004
200views more  BMCBI 2004»
15 years 3 months ago
ABC: software for interactive browsing of genomic multiple sequence alignment data
Background: Alignment and comparison of related genome sequences is a powerful method to identify regions likely to contain functional elements. Such analyses are data intensive, ...
Gregory M. Cooper, Senthil A. G. Singaravelu, Aren...
337
Voted
CPM
2011
Springer
402views Combinatorics» more  CPM 2011»
14 years 7 months ago
Tractability Results for the Consecutive-Ones Property with Multiplicity
A binary matrix has the Consecutive-Ones Property (C1P) if its columns can be ordered in such a way that all 1’s in each row are consecutive. We consider here a variant of the C1...
Cedric Chauve, Ján Manuch, Murray Patterson...
BMCBI
2004
106views more  BMCBI 2004»
15 years 3 months ago
ESTIMA, a tool for EST management in a multi-project environment
Background: Single-pass, partial sequencing of complementary DNA (cDNA) libraries generates thousands of chromatograms that are processed into high quality expressed sequence tags...
Charu G. Kumar, Richard LeDuc, George Gong, Levan ...