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» Comparative modeling without implicit sequence alignments
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AVSS
2006
IEEE
14 years 2 months ago
A Smith-Waterman Local Alignment Approach for Spatial Activity Recognition
In this paper we address the spatial activity recognition problem with an algorithm based on Smith-Waterman (SW) local alignment. The proposed SW approach utilises dynamic program...
Daniel E. Riedel, Svetha Venkatesh, Wanquan Liu
BMCBI
2008
113views more  BMCBI 2008»
13 years 8 months ago
Investigating selection on viruses: a statistical alignment approach
Background: Two problems complicate the study of selection in viral genomes: Firstly, the presence of genes in overlapping reading frames implies that selection in one reading fra...
Saskia de Groot, Thomas Mailund, Gerton Lunter, Jo...
RECOMB
2003
Springer
14 years 9 months ago
A multi-expert system for the automatic detection of protein domains from sequence information
We describe a novel method for detecting the domain structure of a protein from sequence information alone. The method is based on analyzing multiple sequence alignments that are ...
Niranjan Nagarajan, Golan Yona
ICDAR
2011
IEEE
12 years 8 months ago
HMM-Based Alignment of Inaccurate Transcriptions for Historical Documents
—For historical documents, available transcriptions typically are inaccurate when compared with the scanned document images. Not only the position of the words and sentences are ...
Andreas Fischer, Emanuel Indermühle, Volkmar ...
BMCBI
2010
100views more  BMCBI 2010»
13 years 8 months ago
Scaffold filling, contig fusion and comparative gene order inference
Background: There has been a trend in increasing the phylogenetic scope of genome sequencing without finishing the sequence of the genome. Increasing numbers of genomes are being ...
Adriana Muñoz, Chunfang Zheng, Qian Zhu, Vi...