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» Comparative modeling without implicit sequence alignments
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NAR
2007
136views more  NAR 2007»
13 years 8 months ago
DBAli tools: mining the protein structure space
The DBAli tools use a comprehensive set of structural alignments in the DBAli database to leverage the structural information deposited in the Protein Data Bank (PDB). These tools...
Marc A. Martí-Renom, Ursula Pieper, Mallur ...
LICS
1994
IEEE
14 years 22 days ago
Subtyping and Parametricity
In this paper we study the interaction of subtyping and parametricity. We describe a logic for a programming language with parametric polymorphism and subtyping. The logic support...
Gordon D. Plotkin, Martín Abadi, Luca Carde...
ICASSP
2011
IEEE
13 years 10 days ago
EM-style optimization of hidden conditional random fields for grapheme-to-phoneme conversion
We have recently proposed an EM-style algorithm to optimize log-linear models with hidden variables. In this paper, we use this algorithm to optimize a hidden conditional random ï...
Georg Heigold, Stefan Hahn, Patrick Lehnen, Herman...
BMCBI
2008
135views more  BMCBI 2008»
13 years 8 months ago
Functional site prediction selects correct protein models
Background: The prediction of protein structure can be facilitated by the use of constraints based on a knowledge of functional sites. Without this information it is still possibl...
Vijayalakshmi Chelliah, William R. Taylor
BMCBI
2006
98views more  BMCBI 2006»
13 years 8 months ago
Quantitative comparison of EST libraries requires compensation for systematic biases in cDNA generation
Background: Publicly accessible EST libraries contain valuable information that can be utilized for studies of tissue-specific gene expression and processing of individual genes. ...
Donglin Liu, Joel H. Graber