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» Comparative modeling without implicit sequence alignments
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SPIRE
2010
Springer
13 years 6 months ago
Identifying SNPs without a Reference Genome by Comparing Raw Reads
Next generation sequencing (NGS) technologies are being applied to many fields of biology, notably to survey the polymorphism across individuals of a species. However, while single...
Pierre Peterlongo, Nicolas Schnel, Nadia Pisanti, ...
BMCBI
2010
138views more  BMCBI 2010»
13 years 8 months ago
Sigma-2: Multiple sequence alignment of non-coding DNA via an evolutionary model
Background: While most multiple sequence alignment programs expect that all or most of their input is known to be homologous, and penalise insertions and deletions, this is not a ...
Gayathri Jayaraman, Rahul Siddharthan
BMCBI
2005
122views more  BMCBI 2005»
13 years 8 months ago
Bayesian coestimation of phylogeny and sequence alignment
Background: Two central problems in computational biology are the determination of the alignment and phylogeny of a set of biological sequences. The traditional approach to this p...
Gerton Lunter, István Miklós, Alexei...
ACL
2012
11 years 11 months ago
Machine Translation without Words through Substring Alignment
In this paper, we demonstrate that accurate machine translation is possible without the concept of “words,” treating MT as a problem of transformation between character string...
Graham Neubig, Taro Watanabe, Shinsuke Mori, Tatsu...
ACL
2009
13 years 6 months ago
A non-contiguous Tree Sequence Alignment-based Model for Statistical Machine Translation
The tree sequence based translation model allows the violation of syntactic boundaries in a rule to capture non-syntactic phrases, where a tree sequence is a contiguous sequence o...
Jun Sun, Min Zhang, Chew Lim Tan