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» Comparing designs for computer simulation experiments
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BICOB
2009
Springer
14 years 3 months ago
Towards Large-Scale Molecular Dynamics Simulations on Graphics Processors
Atomistic molecular dynamics (MD) simulations are a vital tool in chemical research, as they are able to provide a view of chemical systems and processes that is not obtainable thr...
Joseph E. Davis, Adnan Ozsoy, Sandeep Patel, Miche...
GRID
2004
Springer
14 years 2 months ago
High Performance Threaded Data Streaming for Large Scale Simulations
We have developed a threaded parallel data streaming approach using Logistical Networking (LN) to transfer multi-terabyte simulation data from computers at NERSC to our local anal...
Viraj Bhat, Scott Klasky, Scott Atchley, Micah Bec...
BMCBI
2008
117views more  BMCBI 2008»
13 years 8 months ago
CrossHybDetector: detection of cross-hybridization events in DNA microarray experiments
Background: DNA microarrays contain thousands of different probe sequences represented on their surface. These are designed in such a way that potential cross-hybridization reacti...
Paolo Uva, Emanuele de Rinaldis
HAPTICS
2010
IEEE
13 years 7 months ago
Force-Based Calibration of a Particle System for Realistic Simulation of Nonlinear and Viscoelastic Soft Tissue Behavior
We present a new approach for realistic visio-haptic simulation of nonlinear and viscoelastic behavior of an organ tissue using a particle model. The spring and damper coefficients...
Bektas Baybora Baran, Cagatay Basdogan
SCFBM
2008
112views more  SCFBM 2008»
13 years 8 months ago
The Multiscale Systems Immunology project: software for cell-based immunological simulation
Background: Computer simulations are of increasing importance in modeling biological phenomena. Their purpose is to predict behavior and guide future experiments. The aim of this ...
Faheem Mitha, Timothy A. Lucas, Feng Feng, Thomas ...