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ICMCS
2009
IEEE
250views Multimedia» more  ICMCS 2009»
13 years 5 months ago
Efficient sparse self-similarity matrix construction for repeating sequence detection
This paper presents an efficient way to construct the self-similarity matrix, a popular approach, to detect repeating segments in music. Our proposed method extends the sparse suf...
Lei Wang, Chng Eng Siong, Haizhou Li
BMCBI
2010
121views more  BMCBI 2010»
13 years 5 months ago
A grammar-based distance metric enables fast and accurate clustering of large sets of 16S sequences
Background: We propose a sequence clustering algorithm and compare the partition quality and execution time of the proposed algorithm with those of a popular existing algorithm. T...
David J. Russell, Samuel F. Way, Andrew K. Benson,...
ISMVL
2000
IEEE
79views Hardware» more  ISMVL 2000»
13 years 12 months ago
Novel Resonant-Tunneling Multiple-Threshold Logic Circuit Based on Switching Sequence Detection
We present a novel multiple-threshold circuit using resonant-tunneling diodes (RTDs). The logic operation is based on detecting a switching sequence in the RTD circuit. This schem...
Takao Waho, Kazufumi Hattori, Kouji Honda
BIOCOMP
2006
13 years 9 months ago
Parameterized Computation of LCS for Two Sequences
- The problem of finding the longest common subsequence is a well-known optimization problem because of its applications, especially in bioinformatics. In this paper, by applying t...
Yuan Lin, Jeff Jenness, Xiuzhen Huang
BMCBI
2004
141views more  BMCBI 2004»
13 years 7 months ago
Estimates of statistical significance for comparison of individual positions in multiple sequence alignments
Background: Profile-based analysis of multiple sequence alignments (MSA) allows for accurate comparison of protein families. Here, we address the problems of detecting statistical...
Ruslan Sadreyev, Nick V. Grishin