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ICMCS
2009
IEEE
250views Multimedia» more  ICMCS 2009»
15 years 3 days ago
Efficient sparse self-similarity matrix construction for repeating sequence detection
This paper presents an efficient way to construct the self-similarity matrix, a popular approach, to detect repeating segments in music. Our proposed method extends the sparse suf...
Lei Wang, Chng Eng Siong, Haizhou Li
138
Voted
BMCBI
2010
121views more  BMCBI 2010»
14 years 11 months ago
A grammar-based distance metric enables fast and accurate clustering of large sets of 16S sequences
Background: We propose a sequence clustering algorithm and compare the partition quality and execution time of the proposed algorithm with those of a popular existing algorithm. T...
David J. Russell, Samuel F. Way, Andrew K. Benson,...
ISMVL
2000
IEEE
79views Hardware» more  ISMVL 2000»
15 years 6 months ago
Novel Resonant-Tunneling Multiple-Threshold Logic Circuit Based on Switching Sequence Detection
We present a novel multiple-threshold circuit using resonant-tunneling diodes (RTDs). The logic operation is based on detecting a switching sequence in the RTD circuit. This schem...
Takao Waho, Kazufumi Hattori, Kouji Honda
BIOCOMP
2006
15 years 3 months ago
Parameterized Computation of LCS for Two Sequences
- The problem of finding the longest common subsequence is a well-known optimization problem because of its applications, especially in bioinformatics. In this paper, by applying t...
Yuan Lin, Jeff Jenness, Xiuzhen Huang
BMCBI
2004
141views more  BMCBI 2004»
15 years 2 months ago
Estimates of statistical significance for comparison of individual positions in multiple sequence alignments
Background: Profile-based analysis of multiple sequence alignments (MSA) allows for accurate comparison of protein families. Here, we address the problems of detecting statistical...
Ruslan Sadreyev, Nick V. Grishin