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IPPS
2003
IEEE
14 years 20 days ago
A Fast Algorithm for the Exhaustive Analysis of 12-Nucleotide-Long DNA Sequences. Applications to Human Genomics
We have developed a new algorithm that allows the exhaustive determination of words of up to 12 nucleotides in DNA sequences. It is fast enough as to be used at a genomic scale ru...
Vicente Arnau, Ignacio Marín
PPOPP
2006
ACM
14 years 1 months ago
Performance characterization of molecular dynamics techniques for biomolecular simulations
Large-scale simulations and computational modeling using molecular dynamics (MD) continues to make significant impacts in the field of biology. It is well known that simulations...
Sadaf R. Alam, Jeffrey S. Vetter, Pratul K. Agarwa...
ICCAD
2006
IEEE
141views Hardware» more  ICCAD 2006»
14 years 4 months ago
A code refinement methodology for performance-improved synthesis from C
Although many recent advances have been made in hardware synthesis techniques from software programming languages such as C, the performance of synthesized hardware commonly suffe...
Greg Stitt, Frank Vahid, Walid A. Najjar
ICDCSW
2005
IEEE
14 years 1 months ago
Probability Based Power Aware Error Resilient Coding
Error resilient encoding in video communication is becoming increasingly important due to data transmission over unreliable channels. In this paper, we propose a new power-aware e...
Minyoung Kim, Hyunok Oh, Nikil D. Dutt, Alexandru ...
SAC
2008
ACM
13 years 6 months ago
Implementing Java modeling language contracts with AspectJ
The Java Modeling Language (JML) is a behavioral interface specification language (BISL) designed for Java. It was developed to improve functional software correctness of Java app...
Henrique Rebêlo, Sérgio Soares, Ricar...