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BMCBI
2008
108views more  BMCBI 2008»
13 years 9 months ago
SPRINT: A new parallel framework for R
Background: Microarray analysis allows the simultaneous measurement of thousands to millions of genes or sequences across tens to thousands of different samples. The analysis of t...
Jon Hill, Matthew Hambley, Thorsten Forster, Murie...
PSB
2001
13 years 10 months ago
A Multithreaded Parallel Implementation of a Dynamic Programming Algorithm for Sequence Comparison
This paper discusses the issues involved in implementing a dynamic programming algorithm for biological sequence comparison on a generalpurpose parallel computing platform based o...
W. S. Martins, Juan del Cuvillo, F. J. Useche, Kev...
SC
2004
ACM
14 years 2 months ago
Analysis and Performance Results of a Molecular Modeling Application on Merrimac
The Merrimac supercomputer uses stream processors and a highradix network to achieve high performance at low cost and low power. The stream architecture matches the capabilities o...
Mattan Erez, Jung Ho Ahn, Ankit Garg, William J. D...
BMCBI
2004
150views more  BMCBI 2004»
13 years 8 months ago
Cross-species comparison significantly improves genome-wide prediction of cis-regulatory modules in Drosophila
Background: The discovery of cis-regulatory modules in metazoan genomes is crucial for understanding the connection between genes and organism diversity. It is important to quanti...
Saurabh Sinha, Mark D. Schroeder, Ulrich Unnerstal...
IPPS
2007
IEEE
14 years 3 months ago
Performance Evaluation of two Parallel Programming Paradigms Applied to the Symplectic Integrator Running on COTS PC Cluster
There are two popular parallel programming paradigms available to high performance computing users such as engineering and physics professionals: message passing and distributed s...
Lorena B. C. Passos, Gerson H. Pfitscher, Tarcisio...