Abstract--Sequence similarity search is a common and repeated task in molecular biology. The rapid growth of genomic databases leads to the need of speeding up the treatment of thi...
Background: It is of biological interest to make genome-wide predictions of the locations of DNA melting bubbles using statistical mechanics models. Computationally, this poses th...
We present an implementation of McCaskill's algorithm for computing the base pair probabilities of an RNA molecule for massively parallel message passing architectures. The p...
Most application level fault tolerance schemes in literature are non-adaptive in the sense that the fault tolerance schemes incorporated in applications are usually designed witho...
Zizhong Chen, Ming Yang, Guillermo A. Francia III,...
We show how the traditional protocol stack, such as TCP/IP, can be eliminated for socket based high speed communication within a cluster. The SCI shared memory interconnect is used...