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RECOMB
2003
Springer
14 years 9 months ago
Designing seeds for similarity search in genomic DNA
Large-scale comparison of genomic DNA is of fundamental importance in annotating functional elements of genomes. To perform large comparisons efficiently, BLAST (Methods: Companio...
Jeremy Buhler, Uri Keich, Yanni Sun
BMCBI
2010
102views more  BMCBI 2010»
13 years 9 months ago
Missing genes in the annotation of prokaryotic genomes
Background: Protein-coding gene detection in prokaryotic genomes is considered a much simpler problem than in intron-containing eukaryotic genomes. However there have been reports...
Andrew S. Warren, Jeremy S. Archuleta, Wu-chun Fen...
CLUSTER
2005
IEEE
14 years 2 months ago
Load Balancing using Grid-based Peer-to-Peer Parallel I/O
In the area of Grid computing, there is a growing need to process large amounts of data. To support this trend, we need to develop efficient parallel storage systems that can prov...
Yijian Wang, David R. Kaeli
SC
2005
ACM
14 years 2 months ago
Parallel Programmer Productivity: A Case Study of Novice Parallel Programmers
In developing High-Performance Computing (HPC) software, time to solution is an important metric. This metric is comprised of two main components: the human effort required develo...
Lorin Hochstein, Jeffrey Carver, Forrest Shull, Si...
IPPS
2008
IEEE
14 years 3 months ago
A plug-and-play model for evaluating wavefront computations on parallel architectures
This paper develops a plug-and-play reusable LogGP model that can be used to predict the runtime and scaling behavior of different MPI-based pipelined wavefront applications runni...
Gihan R. Mudalige, Mary K. Vernon, Stephen A. Jarv...