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IPPS
1996
IEEE
14 years 1 months ago
Benefits of Processor Clustering in Designing Large Parallel Systems: When and How?
Advances in multiprocessor interconnect technologyare leading to high performance networks. However, software overheadsassociated with message passing are limiting the processors ...
Debashis Basak, Dhabaleswar K. Panda, Mohammad Ban...
PVLDB
2010
119views more  PVLDB 2010»
13 years 7 months ago
An Architecture for Parallel Topic Models
This paper describes a high performance sampling architecture for inference of latent topic models on a cluster of workstations. Our system is faster than previous work by over an...
Alexander J. Smola, Shravan Narayanamurthy
IPPS
2009
IEEE
14 years 3 months ago
Dynamic parallelization for RNA structure comparison
In this paper we describe the parallelization of a dynamic programming algorithm used to find common RNA secondary structures including pseudoknots and similar structures. The se...
Eric Snow, Eric Aubanel, Patricia Evans
ISMB
2007
13 years 11 months ago
Computational prediction of host-pathogen protein-protein interactions
Our major effort in this reporting period comprised functional genomic studies of key genes for carbon metabolite and nodulation/nitrogen fixation in Sinorhizobium meliloti, compar...
Matthew D. Dyer, T. M. Murali, Bruno W. S. Sobral
CCGRID
2008
IEEE
14 years 3 months ago
Xen-Based HPC: A Parallel I/O Perspective
Virtualization using Xen-based virtual machine environment has yet to permeate the field of high performance computing (HPC). One major requirement for HPC is the availability of ...
Weikuan Yu, Jeffrey S. Vetter