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IPPS
2010
IEEE
13 years 6 months ago
Exploring parallelism in short sequence mapping using Burrows-Wheeler Transform
Next-generation high throughput sequencing instruments are capable of generating hundreds of millions of reads in a single run. Mapping those reads to a reference genome is an ext...
Doruk Bozdag, Ayat Hatem, Ümit V. Çata...
ISCAPDCS
2003
13 years 10 months ago
On the Scalable Computation of Large Sets of Integrals
We consider efficient strategies for the parallel and distributed computation of large sets of multivariate integrals. These arise in many applications such as computational chem...
Elise de Doncker, Ajay K. Gupta, Laurentiu Cucos
OOPSLA
1999
Springer
14 years 1 months ago
Object Views: Language Support for Intelligent Object Caching in Parallel and Distributed Computations
Object-based parallel and distributed applications are becoming increasingly popular, driven by the programmability advantages of component technology and a flat shared-object spa...
Ilya Lipkind, Igor Pechtchanski, Vijay Karamcheti
ICPP
2007
IEEE
14 years 3 months ago
Energy-Efficient Scheduling for Parallel Applications Running on Heterogeneous Clusters
High performance clusters have been widely used to provide amazing computing capability for both commercial and scientific applications. However, huge power consumption has preven...
Ziliang Zong, Xiao Qin, Xiaojun Ruan, Kiranmai Bel...
RECOMB
2005
Springer
14 years 9 months ago
Information Theoretic Approaches to Whole Genome Phylogenies
We describe a novel method for efficient reconstruction of phylogenetic trees, based on sequences of whole genomes or proteomes, whose lengths may greatly vary. The core of our me...
David Burstein, Igor Ulitsky, Tamir Tuller, Benny ...