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IMSCCS
2006
IEEE
14 years 2 months ago
Combining Comparative Genomics with de novo Motif Discovery to Identify Human Transcription Factor DNA-Binding Motifs
Background: As more and more genomes are sequenced, comparative genomics approaches provide a methodology for identifying conserved regulatory elements that may be involved in gen...
Linyong Mao, W. Jim Zheng
BICOB
2009
Springer
14 years 3 months ago
Assembly of Large Genomes from Paired Short Reads
The de novo assembly of genomes from high-throughput short reads is an active area of research. Several promising methods have been recently developed, with applicability mainly re...
Benjamin G. Jackson, Patrick S. Schnable, Srinivas...
ICS
2005
Tsinghua U.
14 years 2 months ago
Automatic generation and tuning of MPI collective communication routines
In order for collective communication routines to achieve high performance on different platforms, they must be able to adapt to the system architecture and use different algori...
Ahmad Faraj, Xin Yuan
SC
2000
ACM
14 years 1 months ago
A Comparison of Three Programming Models for Adaptive Applications on the Origin2000
Adaptive applications have computational workloads and communication patterns which change unpredictably at runtime, requiring dynamic load balancing to achieve scalable performan...
Hongzhang Shan, Jaswinder Pal Singh, Leonid Oliker...
IPPS
2006
IEEE
14 years 2 months ago
iWarp protocol kernel space software implementation
Zero-copy, RDMA, and protocol offload are three very important characteristics of high performance interconnects. Previous networks that made use of these techniques were built u...
Dennis Dalessandro, Ananth Devulapalli, Pete Wycko...