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BMCBI
2011
13 years 4 months ago
Tiling array data analysis: a multiscale approach using wavelets
Background: Tiling array data is hard to interpret due to noise. The wavelet transformation is a widely used technique in signal processing for elucidating the true signal from no...
Alexander Karpikov, Joel S. Rozowsky, Mark Gerstei...
ICCS
2001
Springer
14 years 1 months ago
On Parallel Pseudo-Random Number Generation
Parallel computing has been touted as the pinnacle of high performance digital computing by many. However, many problems remain intractable using deterministic algorithms. Randomiz...
Chih Jeng Kenneth Tan
HPDC
2010
IEEE
13 years 10 months ago
Optimization of a parallel permutation testing function for the SPRINT R package
The statistical language R and Bioconductor package are favoured by many biostatisticians for processing microarray data. The amount of data produced by these analyses has reached...
Savvas Petrou, Terence M. Sloan, Muriel Mewissen, ...
RECOMB
2008
Springer
14 years 9 months ago
Perfect DCJ Rearrangement
We study the problem of transforming a multichromosomal genome into another using Double-Cut-and-Join (DCJ) operations. We introduce the notion of DCJ scenario that does not break ...
Sèverine Bérard, Annie Chateau, Cedr...
CLUSTER
2004
IEEE
14 years 20 days ago
Improved message logging versus improved coordinated checkpointing for fault tolerant MPI
Fault tolerance is a very important concern for critical high performance applications using the MPI library. Several protocols provide automatic and transparent fault detection a...
Pierre Lemarinier, Aurelien Bouteiller, Thomas H&e...