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PPOPP
2010
ACM
14 years 6 months ago
Scaling LAPACK panel operations using parallel cache assignment
In LAPACK many matrix operations are cast as block algorithms which iteratively process a panel using an unblocked algorithm and then update a remainder matrix using the high perf...
Anthony M. Castaldo, R. Clint Whaley
IPPS
2006
IEEE
14 years 3 months ago
FPGA based architecture for DNA sequence comparison and database search
DNA sequence comparison is a computationally intensive problem, known widely since the competition for human DNA decryption. Database search for DNA sequence comparison is of grea...
Euripides Sotiriades, Christos Kozanitis, Apostolo...
BMCBI
2011
13 years 4 months ago
RAIphy: Phylogenetic classification of metagenomics samples using iterative refinement of relative abundance index profiles
Background: Computational analysis of metagenomes requires the taxonomical assignment of the genome contigs assembled from DNA reads of environmental samples. Because of the diver...
Ozkan U. Nalbantoglu, Samuel F. Way, Steven H. Hin...
DEBS
2009
ACM
14 years 3 months ago
Parallel event processing for content-based publish/subscribe systems
Event processing systems are a promising technology for enterprise-scale applications. However, achieving scalability yet maintaining high performance is a challenging problem. Th...
Amer Farroukh, Elias Ferzli, Naweed Tajuddin, Hans...
PACT
2005
Springer
14 years 2 months ago
A Parallel Version for the Propagation Algorithm
This paper presents a parallel version for the Propagation Algorithm which belongs to the region growing family of algorithms. The main goal of our implementation is to decrease de...
Márcio Bastos Castro, Lucas Baldo, Luiz Gus...