Background: The prediction of the structure of large RNAs remains a particular challenge in bioinformatics, due to the computational complexity and low levels of accuracy of state...
We present a novel parallel continuous collision detection (PCCD) method to utilize the widely available multi-core CPU architecture. Our method works with a wide variety of defor...
This work explores the expected performance of three applications on a High Performance Computing cluster interconnected using Infiniband. In particular, the expected performance ...
On multiprocessors with explicitly managed memory hierarchies (EMM), software has the responsibility of moving data in and out of fast local memories. This task can be complex and...
Scott Schneider, Jae-Seung Yeom, Benjamin Rose, Jo...
This paper compares two methods for running an application composed of a set of modules on a grid. The set of modules (collectively called Montage) generates large astronomical im...
Daniel S. Katz, Joseph C. Jacob, G. Bruce Berriman...