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BMCBI
2011
13 years 3 months ago
Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars
Background: The prediction of the structure of large RNAs remains a particular challenge in bioinformatics, due to the computational complexity and low levels of accuracy of state...
Zsuzsanna Sukosd, Bjarne Knudsen, Morten Vaerum, J...
SIGGRAPH
2009
ACM
14 years 3 months ago
PCCD: parallel continuous collision detection
We present a novel parallel continuous collision detection (PCCD) method to utilize the widely available multi-core CPU architecture. Our method works with a wide variety of defor...
Duksu Kim, Jae-Pil Heo, Sung-Eui Yoon
IPPS
2006
IEEE
14 years 3 months ago
A look at application performance sensitivity to the bandwidth and latency of InfiniBand networks
This work explores the expected performance of three applications on a High Performance Computing cluster interconnected using Infiniband. In particular, the expected performance ...
Darren J. Kerbyson
PPOPP
2009
ACM
14 years 9 months ago
A comparison of programming models for multiprocessors with explicitly managed memory hierarchies
On multiprocessors with explicitly managed memory hierarchies (EMM), software has the responsibility of moving data in and out of fast local memories. This task can be complex and...
Scott Schneider, Jae-Seung Yeom, Benjamin Rose, Jo...
ICPPW
2005
IEEE
14 years 2 months ago
A Comparison of Two Methods for Building Astronomical Image Mosaics on a Grid
This paper compares two methods for running an application composed of a set of modules on a grid. The set of modules (collectively called Montage) generates large astronomical im...
Daniel S. Katz, Joseph C. Jacob, G. Bruce Berriman...