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SAC
2004
ACM
14 years 2 months ago
A parallel algorithm for the extraction of structured motifs
In this work we propose a parallel algorithm for the efficient extraction of binding-site consensus from genomic sequences. This algorithm, based on an existing approach, extracts...
Alexandra M. Carvalho, Arlindo L. Oliveira, Ana T....
BMCBI
2008
171views more  BMCBI 2008»
13 years 9 months ago
Fuzzy association rules for biological data analysis: A case study on yeast
Background: Last years' mapping of diverse genomes has generated huge amounts of biological data which are currently dispersed through many databases. Integration of the info...
Francisco J. Lopez, Armando Blanco, Fernando Garci...
JCB
2006
124views more  JCB 2006»
13 years 9 months ago
The Average Common Substring Approach to Phylogenomic Reconstruction
We describe a novel method for efficient reconstruction of phylogenetic trees, based on sequences of whole genomes or proteomes, whose lengths may greatly vary. The core of our me...
Igor Ulitsky, David Burstein, Tamir Tuller, Benny ...
LCN
2005
IEEE
14 years 2 months ago
AntiWorm NPU-based Parallel Bloom Filters for TCP/IP Content Processing in Giga-Ethernet LAN
—TCP/IP protocol suite carries most application data in Internet. TCP flow retrieval has more security meanings than the IP packet payload. Hence, monitoring the TCP flow has mor...
Zhen Chen, Chuang Lin, Jia Ni, Dong-Hua Ruan, Bo Z...
BMCBI
2004
150views more  BMCBI 2004»
13 years 8 months ago
SS-Wrapper: a package of wrapper applications for similarity searches on Linux clusters
Background: Large-scale sequence comparison is a powerful tool for biological inference in modern molecular biology. Comparing new sequences to those in annotated databases is a u...
Chunlin Wang, Elliot J. Lefkowitz