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» Comparisons of Protein Family Dynamics
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BMCBI
2005
158views more  BMCBI 2005»
13 years 8 months ago
Automated generation of heuristics for biological sequence comparison
Background: Exhaustive methods of sequence alignment are accurate but slow, whereas heuristic approaches run quickly, but their complexity makes them more difficult to implement. ...
Guy St. C. Slater, Ewan Birney
AUSAI
2008
Springer
13 years 10 months ago
Propositionalisation of Profile Hidden Markov Models for Biological Sequence Analysis
Hidden Markov Models are a widely used generative model for analysing sequence data. A variant, Profile Hidden Markov Models are a special case used in Bioinformatics to represent,...
Stefan Mutter, Bernhard Pfahringer, Geoffrey Holme...
IJCV
2007
208views more  IJCV 2007»
13 years 8 months ago
Binet-Cauchy Kernels on Dynamical Systems and its Application to the Analysis of Dynamic Scenes
We derive a family of kernels on dynamical systems by applying the Binet-Cauchy theorem to trajectories of states. Our derivation provides a unifying framework for all kernels on d...
S. V. N. Vishwanathan, Alexander J. Smola, Ren&eac...
BMCBI
2005
132views more  BMCBI 2005»
13 years 8 months ago
Kalign - an accurate and fast multiple sequence alignment algorithm
Background: The alignment of multiple protein sequences is a fundamental step in the analysis of biological data. It has traditionally been applied to analyzing protein families f...
Timo Lassmann, Erik L. L. Sonnhammer
INFOSCALE
2006
ACM
14 years 2 months ago
Scalable hardware accelerator for comparing DNA and protein sequences
Abstract— Comparing genetic sequences is a well-known problem in bioinformatics. Newly determined sequences are being compared to known sequences stored in databases in order to ...
Philippe Faes, Bram Minnaert, Mark Christiaens, Er...