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    » Compilation of tRNA sequences and sequences of tRNA genes
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    ISMB
    2007
    162views Computational Biology» more  ISMB 2007»
    Computational prediction of host-pathogen protein-protein interactions
    14 years 3 days ago
    Computational prediction of host-pathogen protein-protein interactions
    Download  www.vbi.vt.edu
    Our major effort in this reporting period comprised functional genomic studies of key genes for carbon metabolite and nodulation/nitrogen fixation in Sinorhizobium meliloti, compar...
    Matthew D. Dyer, T. M. Murali, Bruno W. S. Sobral
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    ISMB
    1997
    154views Computational Biology» more  ISMB 1997»
    Identifying Chimerism in Proteins Using Hidden Markov Models of Codon Usage
    13 years 11 months ago
    Identifying Chimerism in Proteins Using Hidden Markov Models of Codon Usage
    Download  www.aaai.org
    Protein chimerism is a phenomenon involving the combination of multiple ancestral sequences into a single, multi-domain protein through evolution. We propose a novel method for de...
    Lawrence Hunter, Barry Zeeberg
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    BMCBI
    2004
    116views more  BMCBI 2004»
    Evaluation of the suitability of free-energy minimization using nearest-neighbor energy parameters for RNA secondary structure p
    13 years 9 months ago
    Evaluation of the suitability of free-energy minimization using nearest-neighbor energy parameters for RNA secondary structure p
    Download  www.biomedcentral.com
    Background: A detailed understanding of an RNA's correct secondary and tertiary structure is crucial to understanding its function and mechanism in the cell. Free energy mini...
    Kishore J. Doshi, Jamie J. Cannone, Christian W. C...
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    NAR
    2006
    76views more  NAR 2006»
    CorreLogo: an online server for 3D sequence logos of RNA and DNA alignments
    13 years 9 months ago
    CorreLogo: an online server for 3D sequence logos of RNA and DNA alignments
    Download  www.ccrnp.ncifcrf.gov
    We present an online server that generates a 3D representation of properties of user-submitted RNA or DNA alignments. The visualized properties are information of single alignment...
    Eckart Bindewald, Thomas D. Schneider, Bruce A. Sh...
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    ISMB
    2004
    94views Computational Biology» more  ISMB 2004»
    Exploiting conserved structure for faster annotation of non-coding RNAs without loss of accuracy
    13 years 11 months ago
    Exploiting conserved structure for faster annotation of non-coding RNAs without loss of accuracy
    Download  www.cs.washington.edu
    Motivation: Non-coding RNAs (ncRNAs)--functional RNA molecules not coding for proteins--are grouped into hundreds of families of homologs. To find new members of an ncRNA gene fam...
    Zasha Weinberg, Walter L. Ruzzo
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