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BMCBI
2005
140views more  BMCBI 2005»
13 years 8 months ago
JACOP: A simple and robust method for the automated classification of protein sequences with modular architecture
Background: Whole-genome sequencing projects are rapidly producing an enormous number of new sequences. Consequently almost every family of proteins now contains hundreds of membe...
Peter Sperisen, Marco Pagni
HAIS
2009
Springer
14 years 1 months ago
Incremental Kernel Machines for Protein Remote Homology Detection
Abstract. Protein membership prediction is a fundamental task to retrieve information for unknown or unidentified sequences. When support vector machines (SVMs) are associated with...
Lionel Morgado, Carlos Pereira
JCB
2007
106views more  JCB 2007»
13 years 8 months ago
Clustered Sequence Representation for Fast Homology Search
We present a novel approach to managing redundancy in sequence databanks such as GenBank. We store clusters of near-identical sequences as a representative union-sequence and a se...
Michael Cameron, Yaniv Bernstein, Hugh E. Williams
BMCBI
2008
140views more  BMCBI 2008»
13 years 8 months ago
SCPRED: Accurate prediction of protein structural class for sequences of twilight-zone similarity with predicting sequences
Background: Protein structure prediction methods provide accurate results when a homologous protein is predicted, while poorer predictions are obtained in the absence of homologou...
Lukasz A. Kurgan, Krzysztof J. Cios, Ke Chen 0003
NAR
1998
122views more  NAR 1998»
13 years 8 months ago
The PIR-International Protein Sequence Database
The Protein Information Resource (PIR; http://wwwnbrf.georgetown.edu/pir/ ) supports research on molecular evolution, functional genomics, and computational biology by maintaining...
Winona C. Barker, John S. Garavelli, Daniel H. Haf...