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BMCBI
2005
147views more  BMCBI 2005»
13 years 7 months ago
GATA: a graphic alignment tool for comparative sequence analysis
Background: Several problems exist with current methods used to align DNA sequences for comparative sequence analysis. Most dynamic programming algorithms assume that conserved se...
David A. Nix, Michael B. Eisen
COMPGEOM
2009
ACM
14 years 2 months ago
Minimum cuts and shortest homologous cycles
We describe the first algorithms to compute minimum cuts in surface-embedded graphs in near-linear time. Given an undirected graph embedded on an orientable surface of genus g, w...
Erin W. Chambers, Jeff Erickson, Amir Nayyeri
DIALM
2005
ACM
104views Algorithms» more  DIALM 2005»
13 years 9 months ago
Information dissemination in highly dynamic graphs
We investigate to what extent flooding and routing is possible if the graph is allowed to change unpredictably at each time step. We study what minimal requirements are necessary...
Regina O'Dell, Roger Wattenhofer
ICPADS
2007
IEEE
14 years 1 months ago
Parallel Minimum Spanning Tree Heuristic for the steiner problem in graphs
Given an undirected graph with weights associated with its edges, the Steiner tree problem consists of finding a minimum weight subtree spanning a given subset of (terminal) nodes...
Hoda Akbari, Zeinab Iranmanesh, Mohammad Ghodsi
SIGCOMM
2006
ACM
14 years 1 months ago
Systematic topology analysis and generation using degree correlations
Researchers have proposed a variety of metrics to measure important graph properties, for instance, in social, biological, and computer networks. Values for a particular graph met...
Priya Mahadevan, Dmitri V. Krioukov, Kevin R. Fall...