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RECOMB
2005
Springer
14 years 7 months ago
Improved Pattern-Driven Algorithms for Motif Finding in DNA Sequences
Abstract. In order to guarantee that the optimal motif is found, traditional pattern-driven approaches perform an exhaustive search over all candidate motifs of length l. We develo...
Sing-Hoi Sze, Xiaoyan Zhao
CC
2006
Springer
124views System Software» more  CC 2006»
13 years 11 months ago
Polyhedral Code Generation in the Real World
The polyhedral model is known to be a powerful framework to reason about high level loop transformations. Recent developments in optimizing compilers broke some generally accepted ...
Nicolas Vasilache, Cédric Bastoul, Albert C...
BMCBI
2008
135views more  BMCBI 2008»
13 years 7 months ago
Fregene: Simulation of realistic sequence-level data in populations and ascertained samples
Background: FREGENE simulates sequence-level data over large genomic regions in large populations. Because, unlike coalescent simulators, it works forwards through time, it allows...
Marc Chadeau-Hyam, Clive J. Hoggart, Paul F. O'Rei...
TASE
2008
IEEE
13 years 7 months ago
Modeling and Supervisory Control of Railway Networks Using Petri Nets
In this paper we deal with the problem of modeling railway networks with Petri nets so as to apply the theory of supervisory control for discrete event systems to automatically de...
Alessandro Giua, Carla Seatzu
WS
2010
ACM
13 years 5 months ago
Semantic web enabled software analysis
One of the most important decisions researchers face when analyzing software systems is the choice of a proper data analysis/exchange format. In this paper, we present EvoOnt, a s...
Jonas Tappolet, Christoph Kiefer, Abraham Bernstei...