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» Computability of Models for Sequence Assembly
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CANDC
2005
ACM
13 years 8 months ago
Haplotype assembly from aligned weighted SNP fragments
Given an assembled genome of a diploid organism the haplotype assembly problem can be formulated as retrieval of a pair of haplotypes from a set of aligned weighted SNP fragments....
Yu-Ying Zhao, Ling-Yun Wu, Ji-Hong Zhang, Rui-Shen...
SIGCSE
2006
ACM
170views Education» more  SIGCSE 2006»
14 years 2 months ago
MARS: an education-oriented MIPS assembly language simulator
We describe the implementation of “MARS,” a GUI, Java-based simulator for the MIPS assembly language. MIPS, the computer architecture underlying the simulated assembly languag...
Kenneth Vollmar, Pete Sanderson
MMAS
2010
Springer
13 years 3 months ago
Global Energy Matching Method for Atomistic-to-Continuum Modeling of Self-Assembling Biopolymer Aggregates
This paper studies mathematical models of biopolymer supramolecular aggregates that are formed by the self-assembly of single monomers. We develop a new multiscale numerical appro...
Lei Zhang, Leonid Berlyand, Maxim V. Fedorov, Houm...
BMCBI
2011
13 years 3 months ago
RAIphy: Phylogenetic classification of metagenomics samples using iterative refinement of relative abundance index profiles
Background: Computational analysis of metagenomes requires the taxonomical assignment of the genome contigs assembled from DNA reads of environmental samples. Because of the diver...
Ozkan U. Nalbantoglu, Samuel F. Way, Steven H. Hin...
COMGEO
1998
ACM
13 years 8 months ago
Computing fence designs for orienting parts
A common task in automated manufacturing processes is to orient parts prior to assembly. We consider sensorless orientation of a polygonal part by a sequence of fences. We show th...
Robert-Paul Berretty, Kenneth Y. Goldberg, Mark H....