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» Computability of Models for Sequence Assembly
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ISMB
1997
13 years 10 months ago
Inferring Gene Structures in Genomic Sequences Using Pattern Recognition and Expressed Sequence Tags
Abstract.) Ying Xu, Richard J. MuraF, and Edward C. Uberbacher Computer Science and Mathematics Division and tLife Sciences Division Computational methods for gene identification ...
Ying Xu, Richard J. Mural, Edward C. Uberbacher
PERCOM
2009
ACM
14 years 3 months ago
A Dynamic Platform for Runtime Adaptation
—We present a middleware platform for assembling pervasive applications that demand fault-tolerance and adaptivity in distributed, dynamic environments. Unlike typical adaptive m...
Hubert Pham, Justin Mazzola Paluska, Umar Saif, Ch...
BMCBI
2010
155views more  BMCBI 2010»
13 years 6 months ago
BrEPS: a flexible and automatic protocol to compute enzyme-specific sequence profiles for functional annotation
Background: Models for the simulation of metabolic networks require the accurate prediction of enzyme function. Based on a genomic sequence, enzymatic functions of gene products a...
Constantin Bannert, A. Welfle, C. aus dem Spring, ...
BMCBI
2008
128views more  BMCBI 2008»
13 years 8 months ago
In silico analysis of expressed sequence tags from Trichostrongylus vitrinus (Nematoda): comparison of the automated ESTExplorer
Background: The analysis of expressed sequence tags (EST) offers a rapid and cost effective approach to elucidate the transcriptome of an organism, but requires several computatio...
Shivashankar H. Nagaraj, Robin B. Gasser, Alasdair...
SASO
2007
IEEE
14 years 2 months ago
Novel Mathematics-Inspired Algorithms for Self-Adaptive Peer-to-Peer Computing
This paper describes, and evaluates benefits of, a design methodology to translate certain mathematical models into the design of novel, self-adaptive, peer-to-peer (p2p) distrib...
Steven Y. Ko, Indranil Gupta, Yookyung Jo