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» Computational Applications of DNA Structural Scales
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BMCBI
2008
104views more  BMCBI 2008»
15 years 4 months ago
ReRep: Computational detection of repetitive sequences in genome survey sequences (GSS)
Background: Genome survey sequences (GSS) offer a preliminary global view of a genome since, unlike ESTs, they cover coding as well as non-coding DNA and include repetitive region...
Thomas D. Otto, Leonardo H. F. Gomes, Marcelo Alve...
CHI
2010
ACM
15 years 10 months ago
Graphemes: self-organizing shape-based clustered structures for network visualisations
Network visualisations use clustering approaches to simplify the presentation of complex graph structures. We present a novel application of clustering algorithms, which controls ...
Ross Shannon, Aaron J. Quigley, Paddy Nixon
CIKM
2009
Springer
15 years 7 months ago
Suffix trees for very large genomic sequences
A suffix tree is a fundamental data structure for string searching algorithms. Unfortunately, when it comes to the use of suffix trees in real-life applications, the current metho...
Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upt...
ICDM
2006
IEEE
122views Data Mining» more  ICDM 2006»
15 years 10 months ago
Optimal Segmentation Using Tree Models
Sequence data are abundant in application areas such as computational biology, environmental sciences, and telecommunications. Many real-life sequences have a strong segmental str...
Robert Gwadera, Aristides Gionis, Heikki Mannila
104
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ICCV
1998
IEEE
16 years 5 months ago
A Metric for Distributions with Applications to Image Databases
Proceedings of the 1998 IEEE International Conference on Computer Vision, Bombay, India We introduce a new distance between two distributions that we call the Earth Mover's D...
Yossi Rubner, Carlo Tomasi, Leonidas J. Guibas