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» Computational Applications of DNA Structural Scales
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BMCBI
2008
104views more  BMCBI 2008»
13 years 7 months ago
ReRep: Computational detection of repetitive sequences in genome survey sequences (GSS)
Background: Genome survey sequences (GSS) offer a preliminary global view of a genome since, unlike ESTs, they cover coding as well as non-coding DNA and include repetitive region...
Thomas D. Otto, Leonardo H. F. Gomes, Marcelo Alve...
CHI
2010
ACM
14 years 2 months ago
Graphemes: self-organizing shape-based clustered structures for network visualisations
Network visualisations use clustering approaches to simplify the presentation of complex graph structures. We present a novel application of clustering algorithms, which controls ...
Ross Shannon, Aaron J. Quigley, Paddy Nixon
CIKM
2009
Springer
13 years 11 months ago
Suffix trees for very large genomic sequences
A suffix tree is a fundamental data structure for string searching algorithms. Unfortunately, when it comes to the use of suffix trees in real-life applications, the current metho...
Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upt...
ICDM
2006
IEEE
122views Data Mining» more  ICDM 2006»
14 years 1 months ago
Optimal Segmentation Using Tree Models
Sequence data are abundant in application areas such as computational biology, environmental sciences, and telecommunications. Many real-life sequences have a strong segmental str...
Robert Gwadera, Aristides Gionis, Heikki Mannila
ICCV
1998
IEEE
14 years 9 months ago
A Metric for Distributions with Applications to Image Databases
Proceedings of the 1998 IEEE International Conference on Computer Vision, Bombay, India We introduce a new distance between two distributions that we call the Earth Mover's D...
Yossi Rubner, Carlo Tomasi, Leonidas J. Guibas