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BMCBI
2006
118views more  BMCBI 2006»
15 years 3 months ago
Exploration of biological network centralities with CentiBiN
Background: The elucidation of whole-cell regulatory, metabolic, interaction and other biological networks generates the need for a meaningful ranking of network elements. Central...
Björn H. Junker, Dirk Koschützki, Falk S...
FOCI
2007
IEEE
15 years 10 months ago
The Immune System in Pieces: Computational Lessons from Degeneracy in the Immune System
— The concept of degeneracy in biology, including the immune system, is well accepted and has been demonstrated to be present at many different levels. We explore this concept fr...
Miguel Mendao, Jonathan Timmis, Paul S. Andrews, M...
128
Voted
NAR
2006
98views more  NAR 2006»
15 years 3 months ago
oGNM: online computation of structural dynamics using the Gaussian Network Model
An assessment of the equilibrium dynamics of biomolecular systems, and in particular their most cooperativefluctuationsaccessibleundernativestate conditions, is a first step towar...
Lee-Wei Yang, A. J. Rader, Xiong Liu, Christopher ...
FM
2009
Springer
138views Formal Methods» more  FM 2009»
15 years 10 months ago
What Can Formal Methods Bring to Systems Biology?
This position paper argues that the operational modelling approaches from the formal methods community can be applied fruitfully within the systems biology domain. The results can ...
Nicola Bonzanni, K. Anton Feenstra, Wan Fokkink, E...
147
Voted
GD
2009
Springer
15 years 1 months ago
On Open Problems in Biological Network Visualization
Much of the data generated and analyzed in the life sciences can be interpreted and represented by networks or graphs. Network analysis and visualization methods help in investigat...
Mario Albrecht, Andreas Kerren, Karsten Klein, Oli...