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RECOMB
2008
Springer
16 years 4 months ago
Computation of Median Gene Clusters
Whole genome comparison based on gene order has become a popular approach in comparative genomics. An important task in this field is the detection of gene clusters, i.e. sets of g...
Sebastian Böcker, Katharina Jahn, Julia Mixta...
ISMB
1994
15 years 5 months ago
Evolution of a Computer Program for Classifying Protein Segments as Transmembrane Domains Using Genetic Programming
The recently-developedgenetic programming paradigmisused to evoIve a computer program to classify a given protein segment as being a transmembrane domainor non-uansmembranearea of...
John R. Koza
RECOMB
2008
Springer
16 years 4 months ago
On Computing the Breakpoint Reuse Rate in Rearrangement Scenarios
In the past years, many combinatorial arguments have been made to support the theory that mammalian genome rearrangement scenarios rely heavily on breakpoint reuse. Different model...
Anne Bergeron, Julia Mixtacki, Jens Stoye
RECOMB
2010
Springer
15 years 2 months ago
An Approximation Algorithm for Computing a Parsimonious First Speciation in the Gene Duplication Model
We consider the following problem: given a forest of gene family trees on a set of genomes, find a first speciation which splits these genomes into two subsets and minimizes the ...
Aïda Ouangraoua, Krister M. Swenson, Cedric C...
JCB
2006
185views more  JCB 2006»
15 years 4 months ago
A Probabilistic Methodology for Integrating Knowledge and Experiments on Biological Networks
Biological systems are traditionally studied by focusing on a specific subsystem, building an intuitive model for it, and refining the model using results from carefully designed ...
Irit Gat-Viks, Amos Tanay, Daniela Raijman, Ron Sh...