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IPPS
1999
IEEE
14 years 2 months ago
Parallel Biological Sequence Comparison Using Prefix Computations
We present practical parallel algorithms using prefix computations for various problems that arise in pairwise comparison of biological sequences. We consider both constant and af...
Srinivas Aluru, Natsuhiko Futamura, Kishan Mehrotr...
BMCBI
2010
110views more  BMCBI 2010»
13 years 10 months ago
Discovering local patterns of co - evolution: computational aspects and biological examples
Background: Co-evolution is the process in which two (or more) sets of orthologs exhibit a similar or correlative pattern of evolution. Co-evolution is a powerful way to learn abo...
Tamir Tuller, Yifat Felder, Martin Kupiec
ACSD
2009
IEEE
139views Hardware» more  ACSD 2009»
14 years 4 months ago
Biologically-Inspired Massively-Parallel Architectures - Computing Beyond a Million Processors
The SpiNNaker project aims to develop parallel computer systems with more than a million embedded processors. The goal of the project is to support largescale simulations of syste...
Stephen B. Furber, Andrew D. Brown
IJCNN
2006
IEEE
14 years 4 months ago
An Integrated Soft Computing Approach for Predicting Biological Activity of Potential HIV-1 Protease Inhibitors
Abstract— Using a neural network-fuzzy logic-genetic algorithm approach we generate an optimal predictor for biological activities of HIV-1 protease potential inhibitory compound...
Razvan Andonie, Levente Fabry-Asztalos, Sarah Abdu...
GECCO
2005
Springer
124views Optimization» more  GECCO 2005»
14 years 3 months ago
The evolutionary computation approach to motif discovery in biological sequences
Finding motifs — patterns of conserved residues — within nucleotide and protein sequences is a key part of understanding function and regulation within biological systems. Thi...
Michael A. Lones, Andrew M. Tyrrell