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PSB
2010

102views Applied Computing» more PSB 2010»

Exploring Biological Network Dynamics with Ensembles of Graph Partitions

13 years 8 months ago

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Saket Navlakha, Carl Kingsford

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TCSB
2010

201views Computational Biology» more TCSB 2010»

Biomodel Engineering - From Structure to Behavior

13 years 8 months ago

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Biomodel engineering is the science of designing, constructing and analyzing computational models of biological systems. It forms a systematic and powerful extension of earlier mat...

Rainer Breitling, Robin Donaldson, David R. Gilber...

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CISIS
2010
IEEE

152views Software Engineering» more CISIS 2010»

Gene Ontology Rewritten for Computing Gene Functional Similarity

14 years 4 months ago

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Abstract—Discovery biological organisation of the cell in modules network is a challenging task. Currently, approaches based on a controlled vocabulary, as Gene Ontology, to iden...

Alessia Visconti, Francesca Cordero, Marco Botta, ...

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VMCAI
2004
Springer

132views Software Engineering» more VMCAI 2004»

A Grand Challenge for Computing: Towards Full Reactive Modeling of a Multi-cellular Animal

14 years 3 months ago

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Biological systems can be modeled beneficially as reactive systems, using languages and tools developed for the construction of man-made systems. Our long-term aim is to model a f...

David Harel

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CMSB
2007
Springer

94views Applied Computing» more CMSB 2007»

Simultaneous Stochastic Simulation of Multiple Perturbations in Biological Network Models

14 years 4 months ago

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