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» Computer algebra in systems biology
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LICS
2009
IEEE
16 years 24 days ago
An Algebra for Kripke Polynomial Coalgebras
Several dynamical systems, such as deterministic automata and labelled transition systems, can be described as coalgebras of so-called Kripke polynomial functors, built up from co...
Marcello M. Bonsangue, Jan J. M. M. Rutten, Alexan...
AB
2007
Springer
16 years 10 days ago
Cascaded Games
We introduce a novel model construction, cascaded games, that is intended to allow us to study the notion of steady states algebraically and structurally. The model construction is...
Jittisak Senachak, Mun'delanji Vestergaard, Ren&ea...
BMCBI
2006
118views more  BMCBI 2006»
15 years 6 months ago
Low degree metabolites explain essential reactions and enhance modularity in biological networks
Background: Recently there has been a lot of interest in identifying modules at the level of genetic and metabolic networks of organisms, as well as in identifying single genes an...
Areejit Samal, Shalini Singh, Varun Giri, Sandeep ...
BMCBI
2006
145views more  BMCBI 2006»
15 years 6 months ago
GEM System: automatic prototyping of cell-wide metabolic pathway models from genomes
Background: Successful realization of a "systems biology" approach to analyzing cells is a grand challenge for our understanding of life. However, current modeling appro...
Kazuharu Arakawa, Yohei Yamada, Kosaku Shinoda, Yo...
BICOB
2011
Springer
14 years 6 months ago
A Systematic Approach to Evaluate Sustained Stochastic Oscillations
Although the populations of biological systems are inherently discrete and their dynamics are strongly stochastic, it is usual to consider their limiting behaviour for large envir...
Jorge Júlvez, Marta Z. Kwiatkowska, Gethin ...