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CORR
2010
Springer
92views Education» more  CORR 2010»
15 years 4 months ago
Parameterizing by the Number of Numbers
The usefulness of parameterized algorithmics has often depended on what Niedermeier has called, "the art of problem parameterization." In this paper we introduce and expl...
Michael R. Fellows, Serge Gaspers, Frances A. Rosa...
CORR
2010
Springer
156views Education» more  CORR 2010»
15 years 4 months ago
On CSP and the Algebraic Theory of Effects
We consider CSP from the point of view of the algebraic theory of effects, which classifies operations as effect constructors and effect deconstructors; it also provides a link wit...
Rob J. van Glabbeek, Gordon D. Plotkin
ALMOB
2006
155views more  ALMOB 2006»
15 years 4 months ago
A phylogenetic generalized hidden Markov model for predicting alternatively spliced exons
Background: An important challenge in eukaryotic gene prediction is accurate identification of alternatively spliced exons. Functional transcripts can go undetected in gene expres...
Jonathan E. Allen, Steven L. Salzberg
BMCBI
2006
120views more  BMCBI 2006»
15 years 4 months ago
Optimizing amino acid substitution matrices with a local alignment kernel
Background: Detecting remote homologies by direct comparison of protein sequences remains a challenging task. We had previously developed a similarity score between sequences, cal...
Hiroto Saigo, Jean-Philippe Vert, Tatsuya Akutsu
BMCBI
2006
102views more  BMCBI 2006»
15 years 4 months ago
SNA - a toolbox for the stoichiometric analysis of metabolic networks
Background: Despite recent algorithmic and conceptual progress, the stoichiometric network analysis of large metabolic models remains a computationally challenging problem. Result...
Robert Urbanczik
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