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» Computing Maximum Subsequence in Parallel
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EXPCS
2007
14 years 19 days ago
Introducing entropies for representing program behavior and branch predictor performance
Predictors are inherent components of state-of-the-art microprocessors. Branch predictors are discussed actively from diverse perspectives. Performance of a branch predictor large...
Takashi Yokota, Kanemitsu Ootsu, Takanobu Baba
BMCBI
2008
244views more  BMCBI 2008»
13 years 8 months ago
RNAalifold: improved consensus structure prediction for RNA alignments
Background: The prediction of a consensus structure for a set of related RNAs is an important first step for subsequent analyses. RNAalifold, which computes the minimum energy str...
Stephan H. F. Bernhart, Ivo L. Hofacker, Sebastian...
IPPS
2002
IEEE
14 years 1 months ago
Can User-Level Protocols Take Advantage of Multi-CPU NICs?
Modern high speed interconnects such as Myrinet and Gigabit Ethernet have shifted the bottleneck in communication from the interconnect to the messaging software at the sending an...
Piyush Shivam, Pete Wyckoff, Dhabaleswar K. Panda
SP
2008
IEEE
122views Security Privacy» more  SP 2008»
13 years 8 months ago
Large-scale phylogenetic analysis on current HPC architectures
Abstract. Phylogenetic inference is considered a grand challenge in Bioinformatics due to its immense computational requirements. The increasing popularity and availability of larg...
Michael Ott, Jaroslaw Zola, Srinivas Aluru, Andrew...
IPPS
2009
IEEE
14 years 3 months ago
Exploring FPGAs for accelerating the phylogenetic likelihood function
Driven by novel biological wet lab techniques such as pyrosequencing there has been an unprecedented molecular data explosion over the last 2-3 years. The growth of biological seq...
Nikolaos Alachiotis, Euripides Sotiriades, Apostol...