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SMA
2009
ACM
137views Solid Modeling» more  SMA 2009»
14 years 2 months ago
Hierarchical molecular interfaces and solvation electrostatics
Electrostatic interactions play a significant role in determining the binding affinity of molecules and drugs. While significant effort has been devoted to the accurate computat...
Chandrajit L. Bajaj, Shun-Chuan Albert Chen, Guoli...
JCC
2006
103views more  JCC 2006»
13 years 8 months ago
Flooding in GROMACS: Accelerated barrier crossings in molecular dynamics
: The major bottleneck of today's atomistic molecular dynamics (MD) simulations is that because of the enormous computational effort involved, only processes at nanoseconds to...
Oliver F. Lange, Lars V. Schäfer, Helmut Grub...
ICCS
2007
Springer
14 years 2 months ago
A General Long-Time Molecular Dynamics Scheme in Atomistic Systems: Hyperdynamics in Entropy Dominated Systems
Abstract. We extend the hyperdynamics method developed for lowdimensional energy-dominated systems, to simulate slow dynamics in more general atomistic systems. We show that a few ...
Xin Zhou, Yi Jiang
ISBI
2004
IEEE
14 years 9 months ago
Surface Matching Algorithms for Computer Aided Reconstructive Plastic Surgery
High energy traumatic impact of the craniofacial skeleton is an inevitable consequence of today's fast paced society. The work presented in this paper leverages recent advanc...
Suchendra M. Bhandarkar, Ananda S. Chowdhury, Yaro...
FSTTCS
1998
Springer
14 years 19 days ago
Alternative Computational Models: A Comparison of Biomolecular and Quantum Computation
Molecular Computation (MC) is massively parallel computation where data is stored and processed within objects of molecular size. Biomolecular Computation (BMC) is MC using biotec...
John H. Reif