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» Computing Reachable States for Nonlinear Biological Models
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AB
2008
Springer
15 years 10 months ago
Local Structure and Behavior of Boolean Bioregulatory Networks
Abstract. A well-known discrete approach to modeling biological regulatory networks is the logical framework developed by R. Thomas. The network structure is captured in an interac...
Heike Siebert
SPIN
2007
Springer
15 years 10 months ago
SAT-Based Summarization for Boolean Programs
Boolean programs are frequently used to model abstractions of software programs. They have the advantage that reachability properties are decidable, despite the fact that their sta...
Gérard Basler, Daniel Kroening, Georg Weiss...
131
Voted
SPIN
2009
Springer
15 years 10 months ago
Improving Non-Progress Cycle Checks
This paper introduces a new model checking algorithm that searches for non-progress cycles, used mainly to check for livelocks. The algorithm performs an incremental depth-first s...
David Faragó, Peter H. Schmitt
BMCBI
2004
208views more  BMCBI 2004»
15 years 4 months ago
Using 3D Hidden Markov Models that explicitly represent spatial coordinates to model and compare protein structures
Background: Hidden Markov Models (HMMs) have proven very useful in computational biology for such applications as sequence pattern matching, gene-finding, and structure prediction...
Vadim Alexandrov, Mark Gerstein
142
Voted
JACM
2000
77views more  JACM 2000»
15 years 3 months ago
The fault span of crash failures
A crashing network protocol is an asynchronous protocol whose memory does not survive crashes. We show that a crashing network protocol that works over unreliable links can be driv...
George Varghese, Mahesh Jayaram