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» Computing similarity between piecewise-linear functions
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RECOMB
1999
Springer
14 years 23 days ago
Classifying proteins by family using the product of correlated p-values
An important goal in bioinformatics is determining the homology and function of proteins from their sequences. Pairwise sequence similarity algorithms are often employed for this ...
Timothy L. Bailey, William Noble Grundy
BMCBI
2011
13 years 3 months ago
RAIphy: Phylogenetic classification of metagenomics samples using iterative refinement of relative abundance index profiles
Background: Computational analysis of metagenomes requires the taxonomical assignment of the genome contigs assembled from DNA reads of environmental samples. Because of the diver...
Ozkan U. Nalbantoglu, Samuel F. Way, Steven H. Hin...
BMCBI
2008
164views more  BMCBI 2008»
13 years 8 months ago
Word correlation matrices for protein sequence analysis and remote homology detection
Background: Classification of protein sequences is a central problem in computational biology. Currently, among computational methods discriminative kernel-based approaches provid...
Thomas Lingner, Peter Meinicke
SIAMCOMP
2010
94views more  SIAMCOMP 2010»
13 years 6 months ago
Local Monotonicity Reconstruction
We propose a general model of local property reconstruction. Suppose we have a function f on domain Γ, which is supposed to have a particular property P, but may not have the pro...
Michael E. Saks, C. Seshadhri
ICCV
2005
IEEE
14 years 10 months ago
Periodic Motion Detection and Segmentation via Approximate Sequence Alignment
A method for detecting and segmenting periodic motion is presented. We exploit periodicity as a cue and detect periodic motion in complex scenes where common methods for motion se...
Ivan Laptev, Josh Wills, Patrick Pérez, Ser...