In contrast to proteins, many classes of functionally related RNA molecules show a rather weak sequence conservation but instead a fairly well conserved secondary structure. Hence ...
— Systems biologists are often faced with competing models for a given experimental system. Unfortunately, performing experiments can be time-consuming and expensive. Therefore, ...
TurboFold, an iterative algorithm for estimating the common secondary structures of multiple RNA homologs, is presented. The algorithm is motivated by and has structure and attrib...
Gaurav Sharma, Arif Ozgun Harmanci, David H. Mathe...
Data locality and synchronization overhead are two important factors that affect the performance of applications on multiprocessors. Loop fusion is an effective way for reducing s...
Edwin Hsing-Mean Sha, Chenhua Lang, Nelson L. Pass...
Computing the 1-width of the incidence matrix of a Steiner Triple System gives rise to small set covering instances that provide a computational challenge for integer programming ...
James Ostrowski, Jeff Linderoth, Fabrizio Rossi, S...