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WABI
2005
Springer
120views Bioinformatics» more  WABI 2005»
14 years 1 months ago
Multiple Structural RNA Alignment with Lagrangian Relaxation
In contrast to proteins, many classes of functionally related RNA molecules show a rather weak sequence conservation but instead a fairly well conserved secondary structure. Hence ...
Markus Bauer, Gunnar W. Klau, Knut Reinert
CDC
2008
IEEE
140views Control Systems» more  CDC 2008»
14 years 2 months ago
Model discrimination of polynomial systems via stochastic inputs
— Systems biologists are often faced with competing models for a given experimental system. Unfortunately, performing experiments can be time-consuming and expensive. Therefore, ...
Daniel Georgiev, Eric Klavins
ICASSP
2011
IEEE
12 years 11 months ago
Iterative estimation of structures of multiple RNA homologs: Turbofold
TurboFold, an iterative algorithm for estimating the common secondary structures of multiple RNA homologs, is presented. The algorithm is motivated by and has structure and attrib...
Gaurav Sharma, Arif Ozgun Harmanci, David H. Mathe...
ICPP
1996
IEEE
13 years 11 months ago
Polynomial-Time Nested Loop Fusion with Full Parallelism
Data locality and synchronization overhead are two important factors that affect the performance of applications on multiprocessors. Loop fusion is an effective way for reducing s...
Edwin Hsing-Mean Sha, Chenhua Lang, Nelson L. Pass...
ORL
2011
13 years 2 months ago
Solving large Steiner Triple Covering Problems
Computing the 1-width of the incidence matrix of a Steiner Triple System gives rise to small set covering instances that provide a computational challenge for integer programming ...
James Ostrowski, Jeff Linderoth, Fabrizio Rossi, S...