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BMCBI
2008
115views more  BMCBI 2008»
13 years 8 months ago
BioGraphE: high-performance bionetwork analysis using the Biological Graph Environment
Background: Graphs and networks are common analysis representations for biological systems. Many traditional graph algorithms such as k-clique, k-coloring, and subgraph matching h...
George Chin Jr., Daniel G. Chavarría-Mirand...
RECOMB
2005
Springer
14 years 8 months ago
Improved Pattern-Driven Algorithms for Motif Finding in DNA Sequences
Abstract. In order to guarantee that the optimal motif is found, traditional pattern-driven approaches perform an exhaustive search over all candidate motifs of length l. We develo...
Sing-Hoi Sze, Xiaoyan Zhao
ICPP
2009
IEEE
14 years 2 months ago
On Maximum Stability with Enhanced Scalability in High-Churn DHT Deployment
Abstract—When applied in a commercial deployment, DHTbased P2P protocols face a dilemma: although most real-world participants are so unstable that the maintenance overhead is pr...
Junfeng Xie, Zhenhua Li, Guihai Chen, Jie Wu
ICNP
2007
IEEE
14 years 2 months ago
Best Effort Session-Level Congestion Control
— Congestion caused by a large number of interacting TCP flows at a bottleneck network link is different from that caused by a lesser number of flows sending large amounts of d...
S. Ramesh, Sneha Kumar Kasera
MIDDLEWARE
2007
Springer
14 years 2 months ago
A piggybacking approach to reduce overhead in sensor network gossiping
Many wireless sensor network protocols are employing gossipbased message dissemination, where nodes probabilistically forward messages, to reduce message overhead. We are concerne...
Ercan Ucan, Nathanael Thompson, Indranil Gupta