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JMLR
2012
13 years 4 months ago
Active Clustering of Biological Sequences
Given a point set S and an unknown metric d on S, we study the problem of efficiently partitioning S into k clusters while querying few distances between the points. In our model...
Konstantin Voevodski, Maria-Florina Balcan, Heiko ...
CLUSTER
2003
IEEE
15 years 7 months ago
A Cluster-Based Solution for High Performance Hmmpfam Using EARTH Execution Model
Hmmpfam is a widely used computation-intensive bioinformatics software for sequence classification. The contribution of this paper is the first largely scalable and robust clust...
Weirong Zhu, Yanwei Niu, Jizhu Lu, Chuan Shen, Gua...
PDP
2007
IEEE
15 years 8 months ago
An Annotation-Based Framework for Parallel Computing
This paper presents a programming language for parallel computing based on code annotations. It has similar goals and philosophy as OpenMP but it is more tightly coupled to the ob...
Carlos A. Cunha, João Luís Sobral
CONCUR
1999
Springer
15 years 6 months ago
Object Types against Races
This paper investigates an approach for statically preventing race conditions in an object-oriented language. The setting of this work is a variant of Gordon and Hankin’s concurr...
Cormac Flanagan, Martín Abadi
IAT
2009
IEEE
15 years 9 months ago
Clustering with Constrained Similarity Learning
—This paper proposes a method of learning a similarity matrix from pairwise constraints for interactive clustering. The similarity matrix can be learned by solving an optimizatio...
Masayuki Okabe, Seiji Yamada