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JAVA
2000
Springer
14 years 1 months ago
Development routes for message passing parallelism in Java
Java is an attractive environment for writing portable message passing parallel programs. Considerable work in message passing interface bindings for the C and Fortran languages h...
J. A. Mathew, Heath A. James, Kenneth A. Hawick
BIBE
2007
IEEE
128views Bioinformatics» more  BIBE 2007»
14 years 4 months ago
QOMA2: Optimizing the alignment of many sequences
Abstract—We consider the problem of aligning multiple protein sequences with the goal of maximizing the SP (Sum-of-Pairs) score, when the number of sequences is large. The QOMA (...
Xu Zhang, Tamer Kahveci
EXPCS
2007
13 years 12 months ago
Pipeline spectroscopy
Pipeline Spectroscopy is a new technique that allows us to measure the cost of each cache miss. The cost of a miss is displayed (graphed) as a histogram, which represents a precis...
Thomas R. Puzak, Allan Hartstein, Philip G. Emma, ...
GECCO
2008
Springer
182views Optimization» more  GECCO 2008»
13 years 11 months ago
Scaling ant colony optimization with hierarchical reinforcement learning partitioning
This paper merges hierarchical reinforcement learning (HRL) with ant colony optimization (ACO) to produce a HRL ACO algorithm capable of generating solutions for large domains. Th...
Erik J. Dries, Gilbert L. Peterson
BMCBI
2008
118views more  BMCBI 2008»
13 years 10 months ago
DOVIS: an implementation for high-throughput virtual screening using AutoDock
Background: Molecular-docking-based virtual screening is an important tool in drug discovery that is used to significantly reduce the number of possible chemical compounds to be i...
Shuxing Zhang, Kamal Kumar, Xiaohui Jiang, Anders ...