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BMCBI
2010
143views more  BMCBI 2010»
13 years 10 months ago
ETE: a python Environment for Tree Exploration
Background: Many bioinformatics analyses, ranging from gene clustering to phylogenetics, produce hierarchical trees as their main result. These are used to represent the relations...
Jaime Huerta-Cepas, Joaquín Dopazo, Toni Ga...
HPDC
2009
IEEE
14 years 4 months ago
Pluggable parallelisation
This paper presents the concept of pluggable parallelisation that allows scientists to develop “sequential like” codes that can take advantage of multi-core, cluster and grid ...
Rui C. Gonçalves, João Luís S...
ICPADS
2008
IEEE
14 years 4 months ago
Parallel Large Scale Inference of Protein Domain Families
The resolution of combinatorial assortments of protein sequences into domains is a prerequisite for protein sequence interpretation. However the recognition and clustering of homo...
Daniel Kahn, Clément Rezvoy, Fréd&ea...
IPPS
2007
IEEE
14 years 4 months ago
The Next Generation Software Workshop - IPDPS'07
This workshop provides a forum for an overview, project presentations, and discussion of the research fostered and funded initially by the NSF Next Generation Software (NGS) Progr...
Frederica Darema
IEEEPACT
2005
IEEE
14 years 3 months ago
Communication Optimizations for Fine-Grained UPC Applications
Global address space languages like UPC exhibit high performance and portability on a broad class of shared and distributed memory parallel architectures. The most scalable applic...
Wei-Yu Chen, Costin Iancu, Katherine A. Yelick