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BMCBI
2011
12 years 11 months ago
The Proteogenomic Mapping Tool
Background: High-throughput mass spectrometry (MS) proteomics data is increasingly being used to complement traditional structural genome annotation methods. To keep pace with the...
William S. Sanders, Nan Wang, Susan M. Bridges, Br...
BMCBI
2011
12 years 11 months ago
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
Torbjørn Rognes
ICSE
2011
IEEE-ACM
12 years 11 months ago
Inferring better contracts
Considerable progress has been made towards automatic support for one of the principal techniques available to enhance program reliability: equipping programs with extensive contr...
Yi Wei, Carlo A. Furia, Nikolay Kazmin, Bertrand M...
PLDI
2011
ACM
12 years 10 months ago
Understanding POWER multiprocessors
Exploiting today’s multiprocessors requires highperformance and correct concurrent systems code (optimising compilers, language runtimes, OS kernels, etc.), which in turn requir...
Susmit Sarkar, Peter Sewell, Jade Alglave, Luc Mar...
PLDI
2011
ACM
12 years 10 months ago
Automatic compilation of MATLAB programs for synergistic execution on heterogeneous processors
MATLAB is an array language, initially popular for rapid prototyping, but is now being increasingly used to develop production code for numerical and scientific applications. Typ...
Ashwin Prasad, Jayvant Anantpur, R. Govindarajan
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