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CJ
2008
90views more  CJ 2008»
13 years 7 months ago
Parameterized Complexity and Biopolymer Sequence Comparison
The article surveys parameterized algorithms and complexities for computational tasks on biopolymer sequences, including the problems of longest common subsequence, shortest commo...
Liming Cai, Xiuzhen Huang, Chunmei Liu, Frances A....
DIS
2000
Springer
13 years 12 months ago
A Practical Algorithm to Find the Best Subsequence Patterns
Given two sets of strings, consider the problem to find a subsequence that is common to one set but never appears in the other set. The problem is known to be NP-complete. We gene...
Masahiro Hirao, Hiromasa Hoshino, Ayumi Shinohara,...
SIAMDM
1998
89views more  SIAMDM 1998»
13 years 7 months ago
String Noninclusion Optimization Problems
For every string inclusion relation there are two optimization problems: find a longest string included in every string of a given finite language, and find a shortest string in...
Anatoly R. Rubinov, Vadim G. Timkovsky
CIBCB
2007
IEEE
14 years 2 months ago
Multiple Sequence Alignment using Fuzzy Logic
—DNA matching is a crucial step in sequence alignment. Since sequence alignment is an approximate matching process there is a need for good approximate algorithms. The process of...
Sara Nasser, Gregory Vert, Monica N. Nicolescu, Al...
DIS
2001
Springer
14 years 4 days ago
A Practical Algorithm to Find the Best Episode Patterns
Episode pattern is a generalized concept of subsequence pattern where the length of substring containing the subsequence is bounded. Given two sets of strings, consider an optimiza...
Masahiro Hirao, Shunsuke Inenaga, Ayumi Shinohara,...