The article surveys parameterized algorithms and complexities for computational tasks on biopolymer sequences, including the problems of longest common subsequence, shortest commo...
Given two sets of strings, consider the problem to find a subsequence that is common to one set but never appears in the other set. The problem is known to be NP-complete. We gene...
For every string inclusion relation there are two optimization problems: find a longest string included in every string of a given finite language, and find a shortest string in...
—DNA matching is a crucial step in sequence alignment. Since sequence alignment is an approximate matching process there is a need for good approximate algorithms. The process of...
Sara Nasser, Gregory Vert, Monica N. Nicolescu, Al...
Episode pattern is a generalized concept of subsequence pattern where the length of substring containing the subsequence is bounded. Given two sets of strings, consider an optimiza...