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WOB
2004
120views Bioinformatics» more  WOB 2004»
13 years 9 months ago
Reconfigurable Systems for Sequence Alignment and for General Dynamic Programming
ABSTRACT. Reconfigurable systolic arrays can be adapted to efficiently resolve a wide spectrum of computational problems; parallelism is naturally explored in systolic arrays and r...
Ricardo P. Jacobi, Mauricio Ayala-Rincón, L...
BMCBI
2006
100views more  BMCBI 2006»
13 years 7 months ago
Towards a better solution to the shortest common supersequence problem: the deposition and reduction algorithm
Background: The problem of finding a Shortest Common Supersequence (SCS) of a set of sequences is an important problem with applications in many areas. It is a key problem in biol...
Kang Ning, Hon Wai Leong
STRINGOLOGY
2004
13 years 9 months ago
A Note on Bit-Parallel Alignment Computation
Abstract. The edit distance between strings A and B is defined as the minimum number of edit operations needed in converting A into B or vice versa. Typically the allowed edit oper...
Heikki Hyyrö
SPAA
2006
ACM
14 years 1 months ago
The cache complexity of multithreaded cache oblivious algorithms
We present a technique for analyzing the number of cache misses incurred by multithreaded cache oblivious algorithms on an idealized parallel machine in which each processor has a...
Matteo Frigo, Volker Strumpen
TON
2008
125views more  TON 2008»
13 years 7 months ago
Two techniques for fast computation of constrained shortest paths
Abstract-- Computing constrained shortest paths is fundamental to some important network functions such as QoS routing, which is to find the cheapest path that satisfies certain co...
Shigang Chen, Meongchul Song, Sartaj Sahni