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» Constraint Based Languages for Biological Reactions
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ICLP
2009
Springer
14 years 11 months ago
Constraint Based Languages for Biological Reactions
In this paper, we study the modelization of biochemical reaction by using concurrent constraint programming idioms. In particular we will consider the stochastic concurrent constra...
Marco Bottalico, Stefano Bistarelli
GECCO
1999
Springer
14 years 3 months ago
Reaction Temperature Constraints in DNA Computing
Using the thermodynamics of DNA melting, a technique is proposed to choose a reaction temperature for the DNA computation that minimizes the potential for mishybridizations. Adlem...
Russell J. Deaton
CLEIEJ
2006
88views more  CLEIEJ 2006»
13 years 11 months ago
A Stochastic Concurrent Constraint Based Framework to Model and Verify Biological Systems
Concurrent process calculi are powerful formalisms for modelling concurrent systems. The mathematical style underlying process calculi allow to both model and verify properties of...
Carlos Olarte, Camilo Rueda
TCSB
2010
13 years 9 months ago
Rule-Based Modeling of Transcriptional Attenuation at the Tryptophan Operon
Transcriptional attenuation at E.coli’s tryptophan operon is a prime example of RNA-mediated gene regulation. In this paper, we present a discrete stochastic model for this pheno...
Céline Kuttler, Cédric Lhoussaine, M...
CORR
2010
Springer
186views Education» more  CORR 2010»
13 years 11 months ago
A Homogeneous Reaction Rule Language for Complex Event Processing
Event-driven automation of reactive functionalities for complex event processing is an urgent need in today's distributed service-oriented architectures and Web-based event-d...
Adrian Paschke, Alexander Kozlenkov, Harold Boley