The minimal-length encoding approach is applied to define concept of sequence similarity. Asequence is defined to be similar to another sequence or to a set of keywords if it can ...
Similarity-based grouping of data entries in one or more data sources is a task underlying many different data management tasks, such as, structuring search results, removal of red...
Background: Owing to the rapid expansion of RNA structure databases in recent years, efficient methods for structure comparison are in demand for function prediction and evolution...
Background: Biologically active sequence motifs often have positional preferences with respect to a genomic landmark. For example, many known transcription factor binding sites (T...
Nak-Kyeong Kim, Kannan Tharakaraman, Leonardo Mari...
Background: Determining beforehand specific positions to align (anchor points) has proved valuable for the accuracy of automated multiple sequence alignment (MSA) software. This f...