Background: Confidence in pairwise alignments of biological sequences, obtained by various methods such as Blast or Smith-Waterman, is critical for automatic analyses of genomic d...
-- We investigate off-line dictionary oriented approaches to DNA sequence compression, based on the Burrows-Wheeler Transform (BWT). The preponderance of short repeating patterns i...
Donald A. Adjeroh, Yong Zhang, Amar Mukherjee, Mat...
Background: High throughput sequencing has become an increasingly important tool for biological research. However, the existing software systems for managing and processing these ...
David B. Burdick, Christopher C. Cavnor, Jeremy Ha...
Constrained continuous optimization is still an interesting field of research. Many heuristics have been proposed in the last decade. Most of them are based on penalty functions....
This paper proposes a two-step graph partitioning method to discover constrained clusters with an objective function that follows the well-known minmax clustering principle. Compar...