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» Constraint Based Methods for Biological Sequence Analysis
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BMCBI
2006
137views more  BMCBI 2006»
15 years 4 months ago
GOPET: A tool for automated predictions of Gene Ontology terms
Background: Vast progress in sequencing projects has called for annotation on a large scale. A Number of methods have been developed to address this challenging task. These method...
Arunachalam Vinayagam, Coral del Val, Falk Schuber...
BIOCOMP
2006
15 years 5 months ago
TALI: Protein Structure Alignment Using Backbone Torsion Angles
- This article introduces a novel protein structure alignment method (named TALI) based on protein backbone torsion angle instead of the more traditional distance matrix. Represent...
Xijiang Miao, Michael Bryson, Homayoun Valafar
INFOCOM
2006
IEEE
15 years 10 months ago
A Quasi-Species Approach for Modeling the Dynamics of Polymorphic Worms
— Polymorphic worms can change their byte sequence as they replicate and propagate, thwarting the traditional signature analysis techniques used by many intrusion detection syste...
Bradley Stephenson, Biplab Sikdar
BMCBI
2006
169views more  BMCBI 2006»
15 years 4 months ago
Assessing protein similarity with Gene Ontology and its use in subnuclear localization prediction
Background: The accomplishment of the various genome sequencing projects resulted in accumulation of massive amount of gene sequence information. This calls for a large-scale comp...
Zhengdeng Lei, Yang Dai
HASE
2008
IEEE
15 years 11 months ago
A Grammar-Based Reverse Engineering Framework for Behavior Verification
A high assurance system requires both functional and nonfunctional correctness before the system is put into operation. To examine whether a system’s actual performance complies...
Chunying Zhao, Kang Zhang