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» Constraint Based Methods for Biological Sequence Analysis
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BMCBI
2004
158views more  BMCBI 2004»
15 years 4 months ago
Improvement of alignment accuracy utilizing sequentially conserved motifs
Background: Multiple sequence alignment algorithms are very important tools in molecular biology today. Accurate alignment of proteins is central to several areas such as homology...
Saikat Chakrabarti, Nitin Bhardwaj, Prem A. Anand,...
DEXAW
2006
IEEE
127views Database» more  DEXAW 2006»
15 years 10 months ago
History Checking of XML Data Streams
Besides being adopted as the new general data representation format for the Internet, XML is finding increasing acceptance as a native data exchange language. In order to fully e...
Alessandro Campi, Paola Spoletini
BMCBI
2010
154views more  BMCBI 2010»
15 years 1 months ago
Knowledge-based matrix factorization temporally resolves the cellular responses to IL-6 stimulation
Background: External stimulations of cells by hormones, cytokines or growth factors activate signal transduction pathways that subsequently induce a re-arrangement of cellular gen...
Andreas Kowarsch, Florian Blöchl, Sebastian B...
BMCBI
2008
122views more  BMCBI 2008»
15 years 4 months ago
Determining gene expression on a single pair of microarrays
Background: In microarray experiments the numbers of replicates are often limited due to factors such as cost, availability of sample or poor hybridization. There are currently fe...
Robert W. Reid, Anthony A. Fodor
KDD
2006
ACM
156views Data Mining» more  KDD 2006»
16 years 4 months ago
Discovering significant OPSM subspace clusters in massive gene expression data
Order-preserving submatrixes (OPSMs) have been accepted as a biologically meaningful subspace cluster model, capturing the general tendency of gene expressions across a subset of ...
Byron J. Gao, Obi L. Griffith, Martin Ester, Steve...